A module for concatenation of gzipped or uncompressed files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
files_in{:bash}
:file
List of compressed / uncompressed files
*
file_out{:bash}
Groovy Map containing sample information
${prefix}{:bash}
Concatenated file. Will be gzipped if file_out ends with “.gz”
${file_out}
versions_cat{:bash}
${task.process}{:bash}
:string
The name of the process
pigz{:bash}
The name of the tool
pigz --version 2>&1 | sed 's/pigz //g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Just concatenation
