nf-core/fastquorum
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
consensusumiumisunique-molecular-identifier
Version history
What’s Changed
- chore: bump dev version by @znorgaard in https://github.com/nf-core/fastquorum/pull/77
- fix: output bai from ALIGN_CONSENSUS_BAM by @znorgaard in https://github.com/nf-core/fastquorum/pull/79
- fix: file glob by @znorgaard in https://github.com/nf-core/fastquorum/pull/80
- chore: template update for nf-core/tools version 3.0.2 by @znorgaard in https://github.com/nf-core/fastquorum/pull/84
- chore: raise minimum version by @znorgaard in https://github.com/nf-core/fastquorum/pull/85
- fix: lower config min version by @znorgaard in https://github.com/nf-core/fastquorum/pull/86
- fix: align versioning across tests and config by @znorgaard in https://github.com/nf-core/fastquorum/pull/87
- chore: prepare for release by @znorgaard in https://github.com/nf-core/fastquorum/pull/88
- fix: allow non-gzipped fastq input by @znorgaard in https://github.com/nf-core/fastquorum/pull/93
- fix: conda environments by @znorgaard in https://github.com/nf-core/fastquorum/pull/90
- fix: limit downloads by @znorgaard in https://github.com/nf-core/fastquorum/pull/95
- chore: set release date by @znorgaard in https://github.com/nf-core/fastquorum/pull/96
- chore: version bump by @znorgaard in https://github.com/nf-core/fastquorum/pull/99
- Update nf-core components to latest versions by @SPPearce in https://github.com/nf-core/fastquorum/pull/98
- chore: release 1.1.0 by @znorgaard in https://github.com/nf-core/fastquorum/pull/89
Full Changelog: https://github.com/nf-core/fastquorum/compare/1.0.1…1.1.0
What’s Changed
- docs: update subway diagrams by @nh13 in https://github.com/nf-core/fastquorum/pull/51
- updates post 1.0.0 release by @nh13 in https://github.com/nf-core/fastquorum/pull/50
- Add when conditions to prepare by @SPPearce in https://github.com/nf-core/fastquorum/pull/58
- Allow escalation of memory for FilterConsensusReads by @SPPearce in https://github.com/nf-core/fastquorum/pull/60
- fix: support when multiple value args can be a number or a comma-delimited string by @nh13 in https://github.com/nf-core/fastquorum/pull/66
- bugfix: merging lanes would result in an error by @nh13 in https://github.com/nf-core/fastquorum/pull/68
- Allow igenomes to work by @SPPearce in https://github.com/nf-core/fastquorum/pull/67
- chore: prepare for 1.0.1 release by @znorgaard in https://github.com/nf-core/fastquorum/pull/69
- Add stubs to all local modules by @SPPearce in https://github.com/nf-core/fastquorum/pull/71
- chore: correct date by @znorgaard in https://github.com/nf-core/fastquorum/pull/75
- chore: release 1.0.1 by @znorgaard in https://github.com/nf-core/fastquorum/pull/70
New Contributors
- @znorgaard made their first contribution in https://github.com/nf-core/fastquorum/pull/69
Full Changelog: https://github.com/nf-core/fastquorum/compare/1.0.0…1.0.1
What’s Changed
- Fix missing code backtick in README by @nh13 in https://github.com/nf-core/fastquorum/pull/5
- rename fgcons to fastquorum by @nh13 in https://github.com/nf-core/fastquorum/pull/6
- [bugfix] fix missing samtools conda requirement by @nh13 in https://github.com/nf-core/fastquorum/pull/7
- Bugfix/make it work local by @nh13 in https://github.com/nf-core/fastquorum/pull/8
- fix bug with strategy != ‘Paired’ by @brentp in https://github.com/nf-core/fastquorum/pull/18
- Add container for docker/singularity by @SPPearce in https://github.com/nf-core/fastquorum/pull/14
- Template update for nf-core/tools version 2.14.1 by @nh13 in https://github.com/nf-core/fastquorum/pull/30
- Fix duplicate line README.md by @nh13 in https://github.com/nf-core/fastquorum/pull/32
- High throughput version of the best practices by @nh13 in https://github.com/nf-core/fastquorum/pull/33
- doc: add fastquorum subway diagram by @nh13 in https://github.com/nf-core/fastquorum/pull/34
- doc: update docs with more explanations by @nh13 in https://github.com/nf-core/fastquorum/pull/36
- add support for samples to have multiple runs or lanes by @nh13 in https://github.com/nf-core/fastquorum/pull/38
- Bump version to 1.0 by @nh13 in https://github.com/nf-core/fastquorum/pull/41
- ci: update snapshots with 1.0.0 release by @nh13 in https://github.com/nf-core/fastquorum/pull/43
- Suggestions by @SPPearce in https://github.com/nf-core/fastquorum/pull/44
- Release 1.0.0 by @nh13 in https://github.com/nf-core/fastquorum/pull/42
- release 1.0.0 post fixes by @nh13 in https://github.com/nf-core/fastquorum/pull/48
- 1.0.0 redux by @nh13 in https://github.com/nf-core/fastquorum/pull/49
New Contributors
- @nh13 made their first contribution in https://github.com/nf-core/fastquorum/pull/5
- @brentp made their first contribution in https://github.com/nf-core/fastquorum/pull/18
- @SPPearce made their first contribution in https://github.com/nf-core/fastquorum/pull/14
Full Changelog: https://github.com/nf-core/fastquorum/commits/1.0.0